Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 TESC-206ENST00000541210 936 ntTSL 3 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.62■□□□□ 0.25
FOXA2Q9Y261 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 AC011484.1-201ENST00000377652 1995 ntBASIC16.61■□□□□ 0.25
FOXA2Q9Y261 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 NTF6G-201ENST00000591094 616 ntBASIC16.61■□□□□ 0.25
FOXA2Q9Y261 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA2Q9Y261 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 AC004854.2-201ENST00000608450 1441 ntBASIC16.6■□□□□ 0.25
FOXA2Q9Y261 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA2Q9Y261 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 KRT19P1-201ENST00000405746 1186 ntBASIC16.59■□□□□ 0.25
FOXA2Q9Y261 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA2Q9Y261 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.58■□□□□ 0.25
FOXA2Q9Y261 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.58■□□□□ 0.25
FOXA2Q9Y261 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
FOXA2Q9Y261 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
FOXA2Q9Y261 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 AL162430.1-201ENST00000480705 870 ntBASIC16.58■□□□□ 0.24
FOXA2Q9Y261 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms