Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 FP700111.2-201ENST00000619190 1892 ntBASIC18.35■□□□□ 0.53
VSX1Q9NZR4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 ZNRF2P3-201ENST00000424200 374 ntBASIC18.34■□□□□ 0.53
VSX1Q9NZR4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX1Q9NZR4 AC020907.5-201ENST00000624372 1936 ntBASIC18.33■□□□□ 0.53
VSX1Q9NZR4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VSX1Q9NZR4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VSX1Q9NZR4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VSX1Q9NZR4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VSX1Q9NZR4 AC004854.2-201ENST00000608450 1441 ntBASIC18.32■□□□□ 0.52
VSX1Q9NZR4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX1Q9NZR4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.31■□□□□ 0.52
VSX1Q9NZR4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 AC116050.2-201ENST00000612102 1779 ntBASIC18.3■□□□□ 0.52
VSX1Q9NZR4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 SLC7A5P1-201ENST00000568957 537 ntBASIC18.3■□□□□ 0.52
VSX1Q9NZR4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX1Q9NZR4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms