Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.52■□□□□ 0.71
SCN3AQ9NY46 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN3AQ9NY46 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SCN3AQ9NY46 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN3AQ9NY46 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 AC087633.2-202ENST00000565166 1439 ntBASIC19.51■□□□□ 0.71
SCN3AQ9NY46 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 HLA-L-209ENST00000420110 1011 ntBASIC19.51■□□□□ 0.71
SCN3AQ9NY46 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 AC105036.2-201ENST00000569468 176 ntBASIC19.51■□□□□ 0.71
SCN3AQ9NY46 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SCN3AQ9NY46 AC083906.2-201ENST00000511578 360 ntBASIC19.51■□□□□ 0.71
SCN3AQ9NY46 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN3AQ9NY46 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 OR10C1-204ENST00000622521 1039 ntBASIC19.49■□□□□ 0.71
SCN3AQ9NY46 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 AL355802.2-201ENST00000402069 882 ntBASIC19.49■□□□□ 0.71
SCN3AQ9NY46 AL512625.2-201ENST00000417533 625 ntBASIC19.49■□□□□ 0.71
SCN3AQ9NY46 BX276092.2-201ENST00000417668 665 ntBASIC19.49■□□□□ 0.71
SCN3AQ9NY46 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 AC008694.1-202ENST00000636953 945 ntBASIC19.49■□□□□ 0.71
SCN3AQ9NY46 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN3AQ9NY46 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.48■□□□□ 0.71
SCN3AQ9NY46 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 AL121832.2-201ENST00000610979 668 ntBASIC19.48■□□□□ 0.71
SCN3AQ9NY46 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN3AQ9NY46 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 RARRES2P4-201ENST00000514074 484 ntBASIC19.47■□□□□ 0.71
SCN3AQ9NY46 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 DUSP5P2-201ENST00000426873 1033 ntBASIC19.47■□□□□ 0.71
SCN3AQ9NY46 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms