Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
MKS1Q9NXB0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.33■□□□□ 0.84
MKS1Q9NXB0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
MKS1Q9NXB0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
MKS1Q9NXB0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 AC099791.1-201ENST00000416440 715 ntBASIC20.32■□□□□ 0.84
MKS1Q9NXB0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.32■□□□□ 0.84
MKS1Q9NXB0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.31■□□□□ 0.84
MKS1Q9NXB0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 MIR2861-201ENST00000636310 90 ntBASIC20.31■□□□□ 0.84
MKS1Q9NXB0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MKS1Q9NXB0 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 AC008764.7-201ENST00000593779 1081 ntBASIC20.3■□□□□ 0.84
MKS1Q9NXB0 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 AC008175.2-201ENST00000612840 297 ntBASIC20.3■□□□□ 0.84
MKS1Q9NXB0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.3■□□□□ 0.84
MKS1Q9NXB0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MKS1Q9NXB0 BX323043.1-201ENST00000641006 1765 ntBASIC20.29■□□□□ 0.84
MKS1Q9NXB0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 AC125437.2-201ENST00000625180 2167 ntBASIC20.28■□□□□ 0.84
MKS1Q9NXB0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 AC012414.1-201ENST00000556676 535 ntBASIC20.28■□□□□ 0.84
MKS1Q9NXB0 TPRG1LP1-201ENST00000598702 760 ntBASIC20.28■□□□□ 0.84
MKS1Q9NXB0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MKS1Q9NXB0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms