Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 RARRES2P6-201ENST00000567333 442 ntBASIC20.55■□□□□ 0.88
TREX1Q9NSU2 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TREX1Q9NSU2 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.54■□□□□ 0.88
TREX1Q9NSU2 AC007322.3-201ENST00000426526 701 ntBASIC20.54■□□□□ 0.88
TREX1Q9NSU2 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.54■□□□□ 0.88
TREX1Q9NSU2 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.54■□□□□ 0.88
TREX1Q9NSU2 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 AL162377.1-201ENST00000618844 1793 ntBASIC20.53■□□□□ 0.88
TREX1Q9NSU2 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.53■□□□□ 0.88
TREX1Q9NSU2 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 AC010536.3-201ENST00000620306 533 ntBASIC20.52■□□□□ 0.88
TREX1Q9NSU2 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TREX1Q9NSU2 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TREX1Q9NSU2 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 TERF1P5-201ENST00000477545 1207 ntBASIC20.51■□□□□ 0.87
TREX1Q9NSU2 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TREX1Q9NSU2 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms