Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.11■■□□□ 1.13
RC3H2Q9HBD1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RC3H2Q9HBD1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 AL023875.1-201ENST00000640777 796 ntBASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 AL049637.2-201ENST00000641778 930 ntBASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
RC3H2Q9HBD1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
RC3H2Q9HBD1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 AC239809.2-201ENST00000415381 517 ntBASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 ABHD17AP6-201ENST00000458502 1044 ntBASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RC3H2Q9HBD1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
RC3H2Q9HBD1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC22.08■■□□□ 1.12
RC3H2Q9HBD1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H2Q9HBD1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 MIR1224-201ENST00000408193 85 ntBASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
RC3H2Q9HBD1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms