Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 AC005224.4-201ENST00000583262 1652 ntBASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC28BQ9BUN5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 LETM1P2-201ENST00000597330 2178 ntBASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC28BQ9BUN5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 AC092720.2-201ENST00000602388 1665 ntBASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28BQ9BUN5 TCF3P1-201ENST00000423021 1937 ntBASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28BQ9BUN5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 IGHV3-19-201ENST00000521488 291 ntBASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms