Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
COL12A1Q99715 MYC-208ENST00000641036 567 ntBASIC18.17■□□□□ 0.5
COL12A1Q99715 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 AC142381.3-201ENST00000568208 1670 ntBASIC18.17■□□□□ 0.5
COL12A1Q99715 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL12A1Q99715 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
COL12A1Q99715 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.16■□□□□ 0.5
COL12A1Q99715 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL12A1Q99715 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.16■□□□□ 0.5
COL12A1Q99715 AP000525.1-201ENST00000608286 694 ntBASIC18.16■□□□□ 0.5
COL12A1Q99715 AC120498.8-201ENST00000614275 531 ntBASIC18.16■□□□□ 0.5
COL12A1Q99715 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.16■□□□□ 0.5
COL12A1Q99715 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 KRASP1-201ENST00000407852 552 ntBASIC18.16■□□□□ 0.5
COL12A1Q99715 AL137013.1-201ENST00000432946 1228 ntBASIC18.16■□□□□ 0.5
COL12A1Q99715 AL355355.2-201ENST00000442321 338 ntBASIC18.16■□□□□ 0.5
COL12A1Q99715 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.16■□□□□ 0.5
COL12A1Q99715 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.16■□□□□ 0.5
COL12A1Q99715 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.16■□□□□ 0.5
COL12A1Q99715 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.16■□□□□ 0.5
COL12A1Q99715 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL12A1Q99715 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.15■□□□□ 0.5
COL12A1Q99715 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
COL12A1Q99715 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL12A1Q99715 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.15■□□□□ 0.5
COL12A1Q99715 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL12A1Q99715 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.15■□□□□ 0.5
COL12A1Q99715 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.15■□□□□ 0.5
COL12A1Q99715 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL12A1Q99715 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL12A1Q99715 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL12A1Q99715 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
COL12A1Q99715 MCRIP2P1-201ENST00000394346 511 ntBASIC18.14■□□□□ 0.5
COL12A1Q99715 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.14■□□□□ 0.5
COL12A1Q99715 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.14■□□□□ 0.5
COL12A1Q99715 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL12A1Q99715 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.14■□□□□ 0.49
COL12A1Q99715 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL12A1Q99715 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL12A1Q99715 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL12A1Q99715 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL12A1Q99715 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.14■□□□□ 0.49
COL12A1Q99715 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
COL12A1Q99715 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
COL12A1Q99715 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.14■□□□□ 0.49
COL12A1Q99715 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL12A1Q99715 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.14■□□□□ 0.49
COL12A1Q99715 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.14■□□□□ 0.49
COL12A1Q99715 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.14■□□□□ 0.49
COL12A1Q99715 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL12A1Q99715 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.14■□□□□ 0.49
COL12A1Q99715 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.14■□□□□ 0.49
COL12A1Q99715 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.14■□□□□ 0.49
COL12A1Q99715 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL12A1Q99715 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.13■□□□□ 0.49
COL12A1Q99715 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.13■□□□□ 0.49
COL12A1Q99715 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 FAM197Y1-201ENST00000421178 764 ntBASIC18.13■□□□□ 0.49
COL12A1Q99715 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.13■□□□□ 0.49
COL12A1Q99715 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.13■□□□□ 0.49
COL12A1Q99715 AC004263.2-201ENST00000617183 678 ntBASIC18.13■□□□□ 0.49
COL12A1Q99715 AC023511.2-201ENST00000618803 211 ntBASIC18.13■□□□□ 0.49
COL12A1Q99715 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.13■□□□□ 0.49
COL12A1Q99715 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.13■□□□□ 0.49
COL12A1Q99715 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.13■□□□□ 0.49
COL12A1Q99715 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
COL12A1Q99715 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.13■□□□□ 0.49
COL12A1Q99715 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
COL12A1Q99715 AL390955.1-201ENST00000428694 934 ntBASIC18.13■□□□□ 0.49
COL12A1Q99715 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.13■□□□□ 0.49
COL12A1Q99715 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL12A1Q99715 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
COL12A1Q99715 AC005829.2-201ENST00000571422 1056 ntBASIC18.12■□□□□ 0.49
COL12A1Q99715 FAM21FP-204ENST00000608637 956 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms