Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCHD1Q96NR3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PTCHD1Q96NR3 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCHD1Q96NR3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.4■□□□□ 0.7
PTCHD1Q96NR3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD1Q96NR3 AL049796.1-201ENST00000565336 1766 ntBASIC19.39■□□□□ 0.7
PTCHD1Q96NR3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTCHD1Q96NR3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 AC104771.1-201ENST00000603335 964 ntBASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 FAM21FP-204ENST00000608637 956 ntBASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD1Q96NR3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 SLC29A4P1-201ENST00000398760 971 ntBASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 AL512625.2-201ENST00000417533 625 ntBASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD1Q96NR3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 TSPY6P-201ENST00000448518 926 ntBASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 AC093787.1-201ENST00000450396 207 ntBASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PTCHD1Q96NR3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 MKRN4P-201ENST00000444706 1521 ntBASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD1Q96NR3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD1Q96NR3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms