Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CPNE4Q96A23 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 AC026310.3-201ENST00000625186 2373 ntBASIC18.46■□□□□ 0.55
CPNE4Q96A23 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CPNE4Q96A23 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CPNE4Q96A23 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.45■□□□□ 0.54
CPNE4Q96A23 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CPNE4Q96A23 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.45■□□□□ 0.54
CPNE4Q96A23 SLC29A4P1-201ENST00000398760 971 ntBASIC18.45■□□□□ 0.54
CPNE4Q96A23 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.45■□□□□ 0.54
CPNE4Q96A23 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CPNE4Q96A23 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.45■□□□□ 0.54
CPNE4Q96A23 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.45■□□□□ 0.54
CPNE4Q96A23 AC100791.3-201ENST00000617619 330 ntBASIC18.45■□□□□ 0.54
CPNE4Q96A23 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CPNE4Q96A23 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 AC011484.1-201ENST00000377652 1995 ntBASIC18.44■□□□□ 0.54
CPNE4Q96A23 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 AL109923.1-201ENST00000618799 583 ntBASIC18.44■□□□□ 0.54
CPNE4Q96A23 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.44■□□□□ 0.54
CPNE4Q96A23 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CPNE4Q96A23 MKRN4P-201ENST00000444706 1521 ntBASIC18.44■□□□□ 0.54
CPNE4Q96A23 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 HLA-L-209ENST00000420110 1011 ntBASIC18.43■□□□□ 0.54
CPNE4Q96A23 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
CPNE4Q96A23 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CPNE4Q96A23 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.42■□□□□ 0.54
CPNE4Q96A23 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CPNE4Q96A23 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.42■□□□□ 0.54
CPNE4Q96A23 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.42■□□□□ 0.54
CPNE4Q96A23 TSPY6P-201ENST00000448518 926 ntBASIC18.42■□□□□ 0.54
CPNE4Q96A23 AC104771.1-201ENST00000603335 964 ntBASIC18.42■□□□□ 0.54
CPNE4Q96A23 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
CPNE4Q96A23 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms