Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 POM121L13P-201ENST00000422362 380 ntBASIC20.69■□□□□ 0.9
HMGB4Q8WW32 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 C2orf69P4-201ENST00000565394 541 ntBASIC20.69■□□□□ 0.9
HMGB4Q8WW32 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 MIR4497-201ENST00000583208 89 ntBASIC20.68■□□□□ 0.9
HMGB4Q8WW32 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB4Q8WW32 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 Z99916.2-201ENST00000604037 246 ntBASIC20.67■□□□□ 0.9
HMGB4Q8WW32 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB4Q8WW32 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 SNORA78-201ENST00000459373 127 ntBASIC20.66■□□□□ 0.9
HMGB4Q8WW32 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB4Q8WW32 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB4Q8WW32 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
HMGB4Q8WW32 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
HMGB4Q8WW32 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms