Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AC027702.1-201ENST00000563810 1770 ntBASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC65Q8IXS2 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 FP700111.2-201ENST00000619190 1892 ntBASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 AC022517.1-201ENST00000592429 346 ntBASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 AC013268.1-206ENST00000638368 961 ntBASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 AC112229.1-201ENST00000639295 961 ntBASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC65Q8IXS2 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 AL591742.1-201ENST00000604433 565 ntBASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC65Q8IXS2 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 AC011767.1-201ENST00000617410 1153 ntBASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.79■■□□□ 1.24
CCDC65Q8IXS2 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 FEM1AP1-201ENST00000431297 1995 ntBASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 AC007322.4-201ENST00000509611 723 ntBASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 BID-214ENST00000617586 542 ntTSL 5 BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC65Q8IXS2 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 DUX4L16-201ENST00000555130 1264 ntBASIC22.77■■□□□ 1.24
CCDC65Q8IXS2 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.77■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms