Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.28■■□□□ 1
PRPF39Q86UA1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.28■■□□□ 1
PRPF39Q86UA1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.28■■□□□ 1
PRPF39Q86UA1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PRPF39Q86UA1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.28■■□□□ 1
PRPF39Q86UA1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PRPF39Q86UA1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
PRPF39Q86UA1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PRPF39Q86UA1 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.27■■□□□ 1
PRPF39Q86UA1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 AC007322.1-201ENST00000426983 750 ntBASIC21.27■■□□□ 1
PRPF39Q86UA1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.27■■□□□ 1
PRPF39Q86UA1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.27■■□□□ 1
PRPF39Q86UA1 DUX4L16-201ENST00000555130 1264 ntBASIC21.27■■□□□ 1
PRPF39Q86UA1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.27■■□□□ 1
PRPF39Q86UA1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
PRPF39Q86UA1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 LINC01006-201ENST00000333319 2292 ntBASIC21.26■□□□□ 0.99
PRPF39Q86UA1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.26■□□□□ 0.99
PRPF39Q86UA1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRPF39Q86UA1 LINC01521-201ENST00000504184 1943 ntBASIC21.25■□□□□ 0.99
PRPF39Q86UA1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF39Q86UA1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 AL355802.2-201ENST00000402069 882 ntBASIC21.24■□□□□ 0.99
PRPF39Q86UA1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PRPF39Q86UA1 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 AC005181.1-201ENST00000604782 1256 ntBASIC21.23■□□□□ 0.99
PRPF39Q86UA1 AL121832.2-201ENST00000610979 668 ntBASIC21.23■□□□□ 0.99
PRPF39Q86UA1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms