Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 GABARAPL3-202ENST00000624044 1851 ntBASIC18.67■□□□□ 0.58
ATG4DQ86TL0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 AC016769.1-201ENST00000409132 1010 ntBASIC18.67■□□□□ 0.58
ATG4DQ86TL0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4DQ86TL0 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4DQ86TL0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4DQ86TL0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.64■□□□□ 0.58
ATG4DQ86TL0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 AC080038.1-201ENST00000611274 1154 ntBASIC18.64■□□□□ 0.57
ATG4DQ86TL0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 AC092667.1-201ENST00000434301 2586 ntBASIC18.64■□□□□ 0.57
ATG4DQ86TL0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
ATG4DQ86TL0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 AC007322.3-201ENST00000426526 701 ntBASIC18.63■□□□□ 0.57
ATG4DQ86TL0 KRT18P11-201ENST00000435214 1283 ntBASIC18.63■□□□□ 0.57
ATG4DQ86TL0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 AC010536.3-201ENST00000620306 533 ntBASIC18.63■□□□□ 0.57
ATG4DQ86TL0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4DQ86TL0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms