Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
KRT40Q6A162 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.82■■□□□ 1.4
KRT40Q6A162 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
KRT40Q6A162 MIR663A-201ENST00000385250 93 ntBASIC23.82■■□□□ 1.4
KRT40Q6A162 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.82■■□□□ 1.4
KRT40Q6A162 AC243732.1-201ENST00000612648 864 ntBASIC23.82■■□□□ 1.4
KRT40Q6A162 MYCNOS-205ENST00000641950 531 ntBASIC23.82■■□□□ 1.4
KRT40Q6A162 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
KRT40Q6A162 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
KRT40Q6A162 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.82■■□□□ 1.4
KRT40Q6A162 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
KRT40Q6A162 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
KRT40Q6A162 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
KRT40Q6A162 AC007225.1-201ENST00000566331 1836 ntBASIC23.82■■□□□ 1.4
KRT40Q6A162 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
KRT40Q6A162 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
KRT40Q6A162 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.81■■□□□ 1.4
KRT40Q6A162 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
KRT40Q6A162 AC091799.1-201ENST00000422823 811 ntBASIC23.81■■□□□ 1.4
KRT40Q6A162 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.81■■□□□ 1.4
KRT40Q6A162 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.81■■□□□ 1.4
KRT40Q6A162 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.81■■□□□ 1.4
KRT40Q6A162 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.81■■□□□ 1.4
KRT40Q6A162 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.81■■□□□ 1.4
KRT40Q6A162 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
KRT40Q6A162 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
KRT40Q6A162 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
KRT40Q6A162 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.8■■□□□ 1.4
KRT40Q6A162 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
KRT40Q6A162 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
KRT40Q6A162 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.8■■□□□ 1.4
KRT40Q6A162 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
KRT40Q6A162 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.8■■□□□ 1.4
KRT40Q6A162 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
KRT40Q6A162 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
KRT40Q6A162 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.8■■□□□ 1.4
KRT40Q6A162 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.8■■□□□ 1.4
KRT40Q6A162 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
KRT40Q6A162 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
KRT40Q6A162 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
KRT40Q6A162 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.8■■□□□ 1.4
KRT40Q6A162 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.79■■□□□ 1.4
KRT40Q6A162 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
KRT40Q6A162 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.79■■□□□ 1.4
KRT40Q6A162 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.79■■□□□ 1.4
KRT40Q6A162 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.79■■□□□ 1.4
KRT40Q6A162 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.79■■□□□ 1.4
KRT40Q6A162 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
KRT40Q6A162 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.79■■□□□ 1.4
KRT40Q6A162 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.79■■□□□ 1.4
KRT40Q6A162 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
KRT40Q6A162 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
KRT40Q6A162 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
KRT40Q6A162 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.78■■□□□ 1.4
KRT40Q6A162 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.78■■□□□ 1.4
KRT40Q6A162 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.78■■□□□ 1.4
KRT40Q6A162 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.78■■□□□ 1.4
KRT40Q6A162 LINC01006-201ENST00000333319 2292 ntBASIC23.78■■□□□ 1.4
KRT40Q6A162 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.78■■□□□ 1.4
KRT40Q6A162 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
KRT40Q6A162 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.78■■□□□ 1.4
KRT40Q6A162 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
KRT40Q6A162 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.77■■□□□ 1.4
KRT40Q6A162 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.77■■□□□ 1.4
KRT40Q6A162 FP700111.2-201ENST00000619190 1892 ntBASIC23.77■■□□□ 1.4
KRT40Q6A162 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.77■■□□□ 1.4
KRT40Q6A162 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.77■■□□□ 1.4
KRT40Q6A162 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.77■■□□□ 1.4
KRT40Q6A162 AC073314.1-201ENST00000568729 2216 ntBASIC23.77■■□□□ 1.4
KRT40Q6A162 AC116050.2-201ENST00000612102 1779 ntBASIC23.77■■□□□ 1.4
KRT40Q6A162 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.77■■□□□ 1.4
KRT40Q6A162 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
KRT40Q6A162 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
KRT40Q6A162 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
KRT40Q6A162 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.76■■□□□ 1.39
KRT40Q6A162 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
KRT40Q6A162 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
KRT40Q6A162 GPX1P1-201ENST00000388829 606 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms