Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.59■■□□□ 1.21
CCDC40Q4G0X9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC40Q4G0X9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CCDC40Q4G0X9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
CCDC40Q4G0X9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CCDC40Q4G0X9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CCDC40Q4G0X9 AP005212.1-201ENST00000581547 1997 ntBASIC22.58■■□□□ 1.2
CCDC40Q4G0X9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 KRT18P20-201ENST00000548986 1279 ntBASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC40Q4G0X9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 GABARAPL3-202ENST00000624044 1851 ntBASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC40Q4G0X9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 AC027702.1-201ENST00000563810 1770 ntBASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CCDC40Q4G0X9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 KRT19P1-201ENST00000405746 1186 ntBASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC40Q4G0X9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms