Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
LSM3P62310 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
LSM3P62310 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
LSM3P62310 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LSM3P62310 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LSM3P62310 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LSM3P62310 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
LSM3P62310 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.52■□□□□ 0.56
LSM3P62310 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.52■□□□□ 0.56
LSM3P62310 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.52■□□□□ 0.56
LSM3P62310 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.52■□□□□ 0.56
LSM3P62310 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.52■□□□□ 0.56
LSM3P62310 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.52■□□□□ 0.56
LSM3P62310 MIR6722-201ENST00000617286 78 ntBASIC18.52■□□□□ 0.56
LSM3P62310 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.52■□□□□ 0.56
LSM3P62310 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 TCF3P1-201ENST00000423021 1937 ntBASIC18.52■□□□□ 0.56
LSM3P62310 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM3P62310 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.52■□□□□ 0.55
LSM3P62310 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LSM3P62310 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LSM3P62310 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LSM3P62310 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LSM3P62310 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LSM3P62310 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
LSM3P62310 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
LSM3P62310 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
LSM3P62310 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 AC125437.2-201ENST00000625180 2167 ntBASIC18.51■□□□□ 0.55
LSM3P62310 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.51■□□□□ 0.55
LSM3P62310 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.51■□□□□ 0.55
LSM3P62310 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.51■□□□□ 0.55
LSM3P62310 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
LSM3P62310 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
LSM3P62310 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.51■□□□□ 0.55
LSM3P62310 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LSM3P62310 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LSM3P62310 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
LSM3P62310 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LSM3P62310 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM3P62310 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LSM3P62310 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM3P62310 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM3P62310 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.5■□□□□ 0.55
LSM3P62310 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM3P62310 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM3P62310 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM3P62310 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.5■□□□□ 0.55
LSM3P62310 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM3P62310 LETM1P2-201ENST00000597330 2178 ntBASIC18.49■□□□□ 0.55
LSM3P62310 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LSM3P62310 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.49■□□□□ 0.55
LSM3P62310 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.49■□□□□ 0.55
LSM3P62310 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LSM3P62310 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LSM3P62310 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LSM3P62310 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LSM3P62310 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LSM3P62310 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.49■□□□□ 0.55
LSM3P62310 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM3P62310 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms