Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH11P55287 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CDH11P55287 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH11P55287 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH11P55287 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CDH11P55287 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDH11P55287 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH11P55287 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDH11P55287 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH11P55287 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CDH11P55287 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDH11P55287 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDH11P55287 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH11P55287 AC121338.2-201ENST00000622535 1744 ntBASIC18.77■□□□□ 0.6
CDH11P55287 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 AL391422.3-201ENST00000603791 2761 ntBASIC18.77■□□□□ 0.6
CDH11P55287 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH11P55287 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.77■□□□□ 0.6
CDH11P55287 TPRG1LP1-201ENST00000598702 760 ntBASIC18.77■□□□□ 0.6
CDH11P55287 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CDH11P55287 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH11P55287 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CDH11P55287 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH11P55287 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDH11P55287 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.77■□□□□ 0.59
CDH11P55287 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CDH11P55287 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH11P55287 BX005040.4-201ENST00000637145 1518 ntBASIC18.76■□□□□ 0.59
CDH11P55287 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH11P55287 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH11P55287 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH11P55287 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CDH11P55287 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH11P55287 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH11P55287 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH11P55287 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CDH11P55287 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
CDH11P55287 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CDH11P55287 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH11P55287 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.75■□□□□ 0.59
CDH11P55287 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.75■□□□□ 0.59
CDH11P55287 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CDH11P55287 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CDH11P55287 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.75■□□□□ 0.59
CDH11P55287 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH11P55287 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH11P55287 SMUG1P1-201ENST00000590640 811 ntBASIC18.75■□□□□ 0.59
CDH11P55287 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH11P55287 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH11P55287 AC027702.1-201ENST00000563810 1770 ntBASIC18.75■□□□□ 0.59
CDH11P55287 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CDH11P55287 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH11P55287 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms