Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.39■■□□□ 1.01
CDH6P55285 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.39■■□□□ 1.01
CDH6P55285 AC243732.1-201ENST00000612648 864 ntBASIC21.39■■□□□ 1.01
CDH6P55285 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 MYCNOS-205ENST00000641950 531 ntBASIC21.39■■□□□ 1.01
CDH6P55285 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.39■■□□□ 1.01
CDH6P55285 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.39■■□□□ 1.01
CDH6P55285 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CDH6P55285 AC073314.1-201ENST00000568729 2216 ntBASIC21.39■■□□□ 1.01
CDH6P55285 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.38■■□□□ 1.01
CDH6P55285 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CDH6P55285 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CDH6P55285 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 LINC01521-201ENST00000504184 1943 ntBASIC21.38■■□□□ 1.01
CDH6P55285 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.38■■□□□ 1.01
CDH6P55285 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.38■■□□□ 1.01
CDH6P55285 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.38■■□□□ 1.01
CDH6P55285 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
CDH6P55285 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.38■■□□□ 1.01
CDH6P55285 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.38■■□□□ 1.01
CDH6P55285 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.38■■□□□ 1.01
CDH6P55285 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH6P55285 AC092667.1-201ENST00000434301 2586 ntBASIC21.38■■□□□ 1.01
CDH6P55285 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.37■■□□□ 1.01
CDH6P55285 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.37■■□□□ 1.01
CDH6P55285 AL162430.1-201ENST00000480705 870 ntBASIC21.37■■□□□ 1.01
CDH6P55285 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.37■■□□□ 1.01
CDH6P55285 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.37■■□□□ 1.01
CDH6P55285 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.37■■□□□ 1.01
CDH6P55285 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.37■■□□□ 1.01
CDH6P55285 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH6P55285 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH6P55285 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.36■■□□□ 1.01
CDH6P55285 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH6P55285 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.36■■□□□ 1.01
CDH6P55285 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDH6P55285 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH6P55285 AC091799.1-201ENST00000422823 811 ntBASIC21.36■■□□□ 1.01
CDH6P55285 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH6P55285 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH6P55285 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDH6P55285 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH6P55285 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.36■■□□□ 1.01
CDH6P55285 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CDH6P55285 AP005212.1-201ENST00000581547 1997 ntBASIC21.36■■□□□ 1.01
CDH6P55285 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH6P55285 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CDH6P55285 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.35■■□□□ 1.01
CDH6P55285 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.35■■□□□ 1.01
CDH6P55285 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.35■■□□□ 1.01
CDH6P55285 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 AC027702.1-201ENST00000563810 1770 ntBASIC21.35■■□□□ 1.01
CDH6P55285 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.35■■□□□ 1.01
CDH6P55285 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.35■■□□□ 1.01
CDH6P55285 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.35■■□□□ 1.01
CDH6P55285 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH6P55285 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH6P55285 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH6P55285 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.34■■□□□ 1.01
CDH6P55285 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH6P55285 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms