Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
MSX2P35548 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.6■□□□□ 0.73
MSX2P35548 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 TCF3P1-201ENST00000423021 1937 ntBASIC19.6■□□□□ 0.73
MSX2P35548 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.6■□□□□ 0.73
MSX2P35548 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.6■□□□□ 0.73
MSX2P35548 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MSX2P35548 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MSX2P35548 AC018445.3-201ENST00000624177 1945 ntBASIC19.59■□□□□ 0.73
MSX2P35548 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.59■□□□□ 0.73
MSX2P35548 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.59■□□□□ 0.73
MSX2P35548 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.59■□□□□ 0.73
MSX2P35548 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
MSX2P35548 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSX2P35548 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MSX2P35548 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.58■□□□□ 0.73
MSX2P35548 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.58■□□□□ 0.73
MSX2P35548 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
MSX2P35548 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
MSX2P35548 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.58■□□□□ 0.73
MSX2P35548 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
MSX2P35548 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSX2P35548 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSX2P35548 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.58■□□□□ 0.72
MSX2P35548 SLC47A1P1-202ENST00000449666 945 ntBASIC19.58■□□□□ 0.72
MSX2P35548 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.58■□□□□ 0.72
MSX2P35548 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.58■□□□□ 0.72
MSX2P35548 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSX2P35548 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.58■□□□□ 0.72
MSX2P35548 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
MSX2P35548 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
MSX2P35548 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSX2P35548 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSX2P35548 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.58■□□□□ 0.72
MSX2P35548 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSX2P35548 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.57■□□□□ 0.72
MSX2P35548 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.57■□□□□ 0.72
MSX2P35548 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.57■□□□□ 0.72
MSX2P35548 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.57■□□□□ 0.72
MSX2P35548 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
MSX2P35548 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MSX2P35548 RARRES2P1-201ENST00000474487 481 ntBASIC19.57■□□□□ 0.72
MSX2P35548 AP005435.1-201ENST00000529293 1178 ntBASIC19.57■□□□□ 0.72
MSX2P35548 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.57■□□□□ 0.72
MSX2P35548 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSX2P35548 BX005040.4-201ENST00000637145 1518 ntBASIC19.56■□□□□ 0.72
MSX2P35548 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSX2P35548 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSX2P35548 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.56■□□□□ 0.72
MSX2P35548 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.56■□□□□ 0.72
MSX2P35548 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
MSX2P35548 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.56■□□□□ 0.72
MSX2P35548 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.56■□□□□ 0.72
MSX2P35548 KRT16P3-201ENST00000439127 1283 ntBASIC19.56■□□□□ 0.72
MSX2P35548 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.56■□□□□ 0.72
MSX2P35548 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSX2P35548 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSX2P35548 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
MSX2P35548 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.56■□□□□ 0.72
MSX2P35548 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSX2P35548 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.56■□□□□ 0.72
MSX2P35548 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms