Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHRNA3P32297 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.66■■□□□ 1.06
CHRNA3P32297 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.66■■□□□ 1.06
CHRNA3P32297 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CHRNA3P32297 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.65■■□□□ 1.06
CHRNA3P32297 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.65■■□□□ 1.06
CHRNA3P32297 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.65■■□□□ 1.06
CHRNA3P32297 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.65■■□□□ 1.06
CHRNA3P32297 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.65■■□□□ 1.06
CHRNA3P32297 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CHRNA3P32297 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHRNA3P32297 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CHRNA3P32297 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CHRNA3P32297 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.64■■□□□ 1.06
CHRNA3P32297 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CHRNA3P32297 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.64■■□□□ 1.06
CHRNA3P32297 AC027702.1-201ENST00000563810 1770 ntBASIC21.64■■□□□ 1.06
CHRNA3P32297 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHRNA3P32297 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CHRNA3P32297 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHRNA3P32297 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CHRNA3P32297 AC016769.1-201ENST00000409132 1010 ntBASIC21.64■■□□□ 1.05
CHRNA3P32297 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.64■■□□□ 1.05
CHRNA3P32297 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.64■■□□□ 1.05
CHRNA3P32297 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.64■■□□□ 1.05
CHRNA3P32297 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHRNA3P32297 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHRNA3P32297 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CHRNA3P32297 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHRNA3P32297 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.64■■□□□ 1.05
CHRNA3P32297 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
CHRNA3P32297 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.63■■□□□ 1.05
CHRNA3P32297 AC006015.1-201ENST00000429970 570 ntBASIC21.63■■□□□ 1.05
CHRNA3P32297 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
CHRNA3P32297 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.63■■□□□ 1.05
CHRNA3P32297 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.63■■□□□ 1.05
CHRNA3P32297 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.63■■□□□ 1.05
CHRNA3P32297 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.63■■□□□ 1.05
CHRNA3P32297 RARRES2P11-201ENST00000635158 484 ntBASIC21.63■■□□□ 1.05
CHRNA3P32297 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
CHRNA3P32297 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
CHRNA3P32297 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 AC007225.1-201ENST00000566331 1836 ntBASIC21.63■■□□□ 1.05
CHRNA3P32297 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.63■■□□□ 1.05
CHRNA3P32297 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.63■■□□□ 1.05
CHRNA3P32297 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHRNA3P32297 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CHRNA3P32297 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CHRNA3P32297 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CHRNA3P32297 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.62■■□□□ 1.05
CHRNA3P32297 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CHRNA3P32297 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.62■■□□□ 1.05
CHRNA3P32297 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.62■■□□□ 1.05
CHRNA3P32297 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.62■■□□□ 1.05
CHRNA3P32297 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.62■■□□□ 1.05
CHRNA3P32297 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.62■■□□□ 1.05
CHRNA3P32297 AC104187.1-201ENST00000607510 612 ntBASIC21.62■■□□□ 1.05
CHRNA3P32297 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.62■■□□□ 1.05
CHRNA3P32297 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.62■■□□□ 1.05
CHRNA3P32297 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CHRNA3P32297 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHRNA3P32297 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.62■■□□□ 1.05
CHRNA3P32297 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
CHRNA3P32297 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHRNA3P32297 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CHRNA3P32297 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CHRNA3P32297 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CHRNA3P32297 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHRNA3P32297 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CHRNA3P32297 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CHRNA3P32297 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CHRNA3P32297 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CHRNA3P32297 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.61■■□□□ 1.05
CHRNA3P32297 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHRNA3P32297 AC020907.5-201ENST00000624372 1936 ntBASIC21.61■■□□□ 1.05
CHRNA3P32297 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CHRNA3P32297 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CHRNA3P32297 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms