Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
MSH3P20585 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
MSH3P20585 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.44■□□□□ 0.86
MSH3P20585 AC007322.3-201ENST00000426526 701 ntBASIC20.44■□□□□ 0.86
MSH3P20585 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
MSH3P20585 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.44■□□□□ 0.86
MSH3P20585 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 AC068338.2-201ENST00000563278 1430 ntBASIC20.44■□□□□ 0.86
MSH3P20585 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH3P20585 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.43■□□□□ 0.86
MSH3P20585 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.43■□□□□ 0.86
MSH3P20585 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH3P20585 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH3P20585 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH3P20585 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH3P20585 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH3P20585 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH3P20585 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 AC121338.2-201ENST00000622535 1744 ntBASIC20.42■□□□□ 0.86
MSH3P20585 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH3P20585 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.42■□□□□ 0.86
MSH3P20585 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.42■□□□□ 0.86
MSH3P20585 AL162412.1-201ENST00000567129 965 ntBASIC20.42■□□□□ 0.86
MSH3P20585 RAP2CP1-201ENST00000605103 478 ntBASIC20.42■□□□□ 0.86
MSH3P20585 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
MSH3P20585 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
MSH3P20585 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.42■□□□□ 0.86
MSH3P20585 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH3P20585 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH3P20585 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 MIR663A-201ENST00000385250 93 ntBASIC20.41■□□□□ 0.86
MSH3P20585 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH3P20585 CYP2T1P-201ENST00000432607 1285 ntBASIC20.41■□□□□ 0.86
MSH3P20585 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 AC008694.1-202ENST00000636953 945 ntBASIC20.41■□□□□ 0.86
MSH3P20585 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH3P20585 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH3P20585 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH3P20585 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH3P20585 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
MSH3P20585 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH3P20585 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH3P20585 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH3P20585 AC011484.1-201ENST00000377652 1995 ntBASIC20.4■□□□□ 0.86
MSH3P20585 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSH3P20585 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH3P20585 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH3P20585 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
MSH3P20585 AC006970.2-201ENST00000450065 779 ntBASIC20.4■□□□□ 0.86
MSH3P20585 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.4■□□□□ 0.86
MSH3P20585 AC090192.1-201ENST00000517740 490 ntBASIC20.4■□□□□ 0.86
MSH3P20585 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH3P20585 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH3P20585 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH3P20585 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms