Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC4P09017 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC4P09017 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC4P09017 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
HOXC4P09017 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.16■□□□□ 0.82
HOXC4P09017 ESRRAP1-201ENST00000400596 1257 ntBASIC20.16■□□□□ 0.82
HOXC4P09017 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.16■□□□□ 0.82
HOXC4P09017 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
HOXC4P09017 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.16■□□□□ 0.82
HOXC4P09017 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.16■□□□□ 0.82
HOXC4P09017 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.16■□□□□ 0.82
HOXC4P09017 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.16■□□□□ 0.82
HOXC4P09017 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.16■□□□□ 0.82
HOXC4P09017 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.16■□□□□ 0.82
HOXC4P09017 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 AC027702.1-201ENST00000563810 1770 ntBASIC20.16■□□□□ 0.82
HOXC4P09017 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC4P09017 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.15■□□□□ 0.82
HOXC4P09017 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC4P09017 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.15■□□□□ 0.82
HOXC4P09017 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC4P09017 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.15■□□□□ 0.82
HOXC4P09017 AC026366.1-201ENST00000488803 879 ntBASIC20.15■□□□□ 0.82
HOXC4P09017 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
HOXC4P09017 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HOXC4P09017 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.15■□□□□ 0.82
HOXC4P09017 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC4P09017 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
HOXC4P09017 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HOXC4P09017 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC4P09017 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC4P09017 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.14■□□□□ 0.81
HOXC4P09017 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC4P09017 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC4P09017 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC4P09017 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HOXC4P09017 PNMA6B-201ENST00000538162 1200 ntBASIC20.14■□□□□ 0.81
HOXC4P09017 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HOXC4P09017 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.14■□□□□ 0.81
HOXC4P09017 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.14■□□□□ 0.81
HOXC4P09017 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC4P09017 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 AL024507.2-201ENST00000606070 2574 ntBASIC20.13■□□□□ 0.81
HOXC4P09017 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.13■□□□□ 0.81
HOXC4P09017 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.13■□□□□ 0.81
HOXC4P09017 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
HOXC4P09017 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.13■□□□□ 0.81
HOXC4P09017 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.13■□□□□ 0.81
HOXC4P09017 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
HOXC4P09017 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC4P09017 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.13■□□□□ 0.81
HOXC4P09017 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 AP003097.1-201ENST00000530657 1135 ntBASIC20.12■□□□□ 0.81
HOXC4P09017 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.12■□□□□ 0.81
HOXC4P09017 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HOXC4P09017 AC121338.2-201ENST00000622535 1744 ntBASIC20.12■□□□□ 0.81
HOXC4P09017 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC4P09017 AC092368.3-202ENST00000574180 1591 ntBASIC20.12■□□□□ 0.81
HOXC4P09017 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms