Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 PCDHAC2-203ENST00000615316 3011 ntBASIC19.56■□□□□ 0.72
CPSF4O95639 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
CPSF4O95639 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4O95639 IRS3P-201ENST00000223076 1006 ntBASIC19.55■□□□□ 0.72
CPSF4O95639 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4O95639 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4O95639 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
CPSF4O95639 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.55■□□□□ 0.72
CPSF4O95639 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4O95639 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.55■□□□□ 0.72
CPSF4O95639 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
CPSF4O95639 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CPSF4O95639 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CPSF4O95639 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.54■□□□□ 0.72
CPSF4O95639 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
CPSF4O95639 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.54■□□□□ 0.72
CPSF4O95639 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.54■□□□□ 0.72
CPSF4O95639 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CPSF4O95639 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4O95639 AC011484.1-201ENST00000377652 1995 ntBASIC19.53■□□□□ 0.72
CPSF4O95639 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
CPSF4O95639 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 AC020907.5-201ENST00000624372 1936 ntBASIC19.53■□□□□ 0.72
CPSF4O95639 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.53■□□□□ 0.72
CPSF4O95639 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
CPSF4O95639 AC005837.3-201ENST00000612163 286 ntBASIC19.53■□□□□ 0.72
CPSF4O95639 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CPSF4O95639 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.53■□□□□ 0.72
CPSF4O95639 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.53■□□□□ 0.72
CPSF4O95639 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4O95639 KRT87P-202ENST00000534226 1464 ntBASIC19.53■□□□□ 0.72
CPSF4O95639 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CPSF4O95639 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CPSF4O95639 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.52■□□□□ 0.72
CPSF4O95639 POU5F1P4-201ENST00000413175 1085 ntBASIC19.52■□□□□ 0.72
CPSF4O95639 AC105265.2-201ENST00000467189 838 ntBASIC19.52■□□□□ 0.72
CPSF4O95639 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.52■□□□□ 0.72
CPSF4O95639 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.52■□□□□ 0.72
CPSF4O95639 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.52■□□□□ 0.72
CPSF4O95639 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4O95639 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
CPSF4O95639 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CPSF4O95639 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.52■□□□□ 0.71
CPSF4O95639 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.52■□□□□ 0.71
CPSF4O95639 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.71
CPSF4O95639 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.52■□□□□ 0.71
CPSF4O95639 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.51■□□□□ 0.71
CPSF4O95639 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CPSF4O95639 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.51■□□□□ 0.71
CPSF4O95639 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.51■□□□□ 0.71
CPSF4O95639 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
CPSF4O95639 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.51■□□□□ 0.71
CPSF4O95639 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CPSF4O95639 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms