Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SGCEO43556 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 AC026271.2-201ENST00000428091 497 ntBASIC18.12■□□□□ 0.49
SGCEO43556 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.12■□□□□ 0.49
SGCEO43556 RARRES2P11-201ENST00000635158 484 ntBASIC18.12■□□□□ 0.49
SGCEO43556 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.12■□□□□ 0.49
SGCEO43556 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
SGCEO43556 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SGCEO43556 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.11■□□□□ 0.49
SGCEO43556 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SGCEO43556 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.11■□□□□ 0.49
SGCEO43556 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SGCEO43556 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.11■□□□□ 0.49
SGCEO43556 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.11■□□□□ 0.49
SGCEO43556 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SGCEO43556 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.1■□□□□ 0.49
SGCEO43556 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.1■□□□□ 0.49
SGCEO43556 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.1■□□□□ 0.49
SGCEO43556 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.1■□□□□ 0.49
SGCEO43556 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
SGCEO43556 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SGCEO43556 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 SLC7A5P1-201ENST00000568957 537 ntBASIC18.1■□□□□ 0.49
SGCEO43556 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
SGCEO43556 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.1■□□□□ 0.49
SGCEO43556 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SGCEO43556 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SGCEO43556 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SGCEO43556 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SGCEO43556 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SGCEO43556 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
SGCEO43556 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.09■□□□□ 0.49
SGCEO43556 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.09■□□□□ 0.49
SGCEO43556 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SGCEO43556 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
SGCEO43556 KRT18P5-201ENST00000436075 1291 ntBASIC18.09■□□□□ 0.49
SGCEO43556 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.09■□□□□ 0.49
SGCEO43556 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.09■□□□□ 0.49
SGCEO43556 UBE2DNL-204ENST00000602536 740 ntBASIC18.09■□□□□ 0.49
SGCEO43556 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.09■□□□□ 0.49
SGCEO43556 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SGCEO43556 AC011484.1-201ENST00000377652 1995 ntBASIC18.09■□□□□ 0.49
SGCEO43556 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SGCEO43556 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.09■□□□□ 0.49
SGCEO43556 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SGCEO43556 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.49
SGCEO43556 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SGCEO43556 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SGCEO43556 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SGCEO43556 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
SGCEO43556 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SGCEO43556 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SGCEO43556 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
SGCEO43556 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SGCEO43556 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.08■□□□□ 0.48
SGCEO43556 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.08■□□□□ 0.48
SGCEO43556 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.08■□□□□ 0.48
SGCEO43556 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.08■□□□□ 0.48
SGCEO43556 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.08■□□□□ 0.48
SGCEO43556 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.08■□□□□ 0.48
SGCEO43556 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.08■□□□□ 0.48
SGCEO43556 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.08■□□□□ 0.48
SGCEO43556 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SGCEO43556 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SGCEO43556 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SGCEO43556 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SGCEO43556 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SGCEO43556 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms