Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM38O00635 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRIM38O00635 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.65■□□□□ 0.9
TRIM38O00635 RNA5SP413-201ENST00000516373 109 ntBASIC20.65■□□□□ 0.9
TRIM38O00635 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM38O00635 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.65■□□□□ 0.9
TRIM38O00635 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM38O00635 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM38O00635 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM38O00635 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM38O00635 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM38O00635 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TRIM38O00635 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM38O00635 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM38O00635 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.64■□□□□ 0.9
TRIM38O00635 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM38O00635 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.64■□□□□ 0.9
TRIM38O00635 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM38O00635 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM38O00635 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
TRIM38O00635 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
TRIM38O00635 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM38O00635 AC008694.1-202ENST00000636953 945 ntBASIC20.64■□□□□ 0.89
TRIM38O00635 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM38O00635 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM38O00635 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM38O00635 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 AC092667.1-201ENST00000434301 2586 ntBASIC20.63■□□□□ 0.89
TRIM38O00635 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.63■□□□□ 0.89
TRIM38O00635 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TRIM38O00635 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.63■□□□□ 0.89
TRIM38O00635 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 POU5F1P3-201ENST00000428824 1078 ntBASIC20.63■□□□□ 0.89
TRIM38O00635 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM38O00635 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM38O00635 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.63■□□□□ 0.89
TRIM38O00635 AC008687.6-201ENST00000596318 630 ntBASIC20.63■□□□□ 0.89
TRIM38O00635 AC008175.2-201ENST00000612840 297 ntBASIC20.63■□□□□ 0.89
TRIM38O00635 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRIM38O00635 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM38O00635 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM38O00635 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM38O00635 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
TRIM38O00635 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
TRIM38O00635 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM38O00635 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
TRIM38O00635 AL512625.2-201ENST00000417533 625 ntBASIC20.62■□□□□ 0.89
TRIM38O00635 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
TRIM38O00635 AC069236.1-201ENST00000604339 616 ntBASIC20.62■□□□□ 0.89
TRIM38O00635 AC120498.10-201ENST00000621827 505 ntBASIC20.62■□□□□ 0.89
TRIM38O00635 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
TRIM38O00635 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.62■□□□□ 0.89
TRIM38O00635 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM38O00635 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM38O00635 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.61■□□□□ 0.89
TRIM38O00635 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM38O00635 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM38O00635 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM38O00635 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.61■□□□□ 0.89
TRIM38O00635 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.61■□□□□ 0.89
TRIM38O00635 AC092118.2-201ENST00000613495 667 ntBASIC20.61■□□□□ 0.89
TRIM38O00635 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM38O00635 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
TRIM38O00635 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM38O00635 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TRIM38O00635 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.6■□□□□ 0.89
TRIM38O00635 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM38O00635 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TRIM38O00635 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TRIM38O00635 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.6■□□□□ 0.89
TRIM38O00635 POU5F1P4-201ENST00000413175 1085 ntBASIC20.6■□□□□ 0.89
TRIM38O00635 BX276092.2-201ENST00000417668 665 ntBASIC20.6■□□□□ 0.89
TRIM38O00635 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms