Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 AC011270.2-201ENST00000624293 2550 ntBASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CHKB-CPT1BH3BT56 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 AFG3L1P-217ENST00000557444 2447 ntBASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CHKB-CPT1BH3BT56 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CHKB-CPT1BH3BT56 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms