Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL6A5A8TX70 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
COL6A5A8TX70 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A5A8TX70 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A5A8TX70 AL691432.3-201ENST00000621860 400 ntBASIC16.19■□□□□ 0.18
COL6A5A8TX70 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A5A8TX70 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 AP000347.1-202ENST00000435868 847 ntBASIC16.18■□□□□ 0.18
COL6A5A8TX70 FDX1P1-201ENST00000449115 551 ntBASIC16.18■□□□□ 0.18
COL6A5A8TX70 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A5A8TX70 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A5A8TX70 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A5A8TX70 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 KRT18P16-201ENST00000510337 1294 ntBASIC16.17■□□□□ 0.18
COL6A5A8TX70 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 C2orf69P3-201ENST00000565542 1120 ntBASIC16.17■□□□□ 0.18
COL6A5A8TX70 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A5A8TX70 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A5A8TX70 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A5A8TX70 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
COL6A5A8TX70 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A5A8TX70 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
COL6A5A8TX70 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A5A8TX70 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 FAM207BP-201ENST00000447172 505 ntBASIC16.15■□□□□ 0.18
COL6A5A8TX70 AC116562.2-201ENST00000507042 360 ntBASIC16.15■□□□□ 0.18
COL6A5A8TX70 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.15■□□□□ 0.18
COL6A5A8TX70 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 NAPSB-206ENST00000562112 1266 ntBASIC16.15■□□□□ 0.18
COL6A5A8TX70 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 AC091799.1-201ENST00000422823 811 ntBASIC16.15■□□□□ 0.18
COL6A5A8TX70 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 AC079089.2-201ENST00000531211 1277 ntBASIC16.15■□□□□ 0.18
COL6A5A8TX70 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A5A8TX70 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A5A8TX70 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 AC004812.2-201ENST00000611079 2094 ntBASIC16.14■□□□□ 0.17
COL6A5A8TX70 AL139125.2-201ENST00000623134 1869 ntBASIC16.14■□□□□ 0.17
COL6A5A8TX70 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms