Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 AC079598.2-202ENST00000546624 1451 ntBASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 AF186192.3-201ENST00000583427 947 ntBASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A6A6NMZ7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 KRT18P56-201ENST00000507275 550 ntBASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 AC092068.2-201ENST00000590491 1708 ntBASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A6A6NMZ7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 AL390955.1-201ENST00000428694 934 ntBASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 REXO1L10P-201ENST00000615707 1290 ntBASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 AC006557.6-201ENST00000623071 864 ntBASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 AC137767.1-201ENST00000602918 1920 ntBASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A6A6NMZ7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 C2orf69P3-201ENST00000565542 1120 ntBASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 AC073195.1-201ENST00000607241 877 ntBASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A6A6NMZ7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A6A6NMZ7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 AC005829.2-201ENST00000571422 1056 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 C11orf96-202ENST00000528572 1834 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 AC003102.1-202ENST00000563394 1796 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 CYP2D8P-201ENST00000433633 1490 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 UNC93B2-201ENST00000285383 730 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 AC010947.1-201ENST00000623454 693 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 AL358472.4-201ENST00000633140 710 ntBASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms