Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 BX005040.4-201ENST00000637145 1518 ntBASIC19.88■□□□□ 0.77
VPS4AQ9UN37 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 KRT18P6-201ENST00000555540 1265 ntBASIC19.88■□□□□ 0.77
VPS4AQ9UN37 AL121832.2-201ENST00000610979 668 ntBASIC19.88■□□□□ 0.77
VPS4AQ9UN37 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 AC009237.3-201ENST00000393279 1427 ntBASIC19.87■□□□□ 0.77
VPS4AQ9UN37 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VPS4AQ9UN37 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 FAM201B-201ENST00000458407 597 ntBASIC19.86■□□□□ 0.77
VPS4AQ9UN37 AC142086.2-201ENST00000569753 217 ntBASIC19.86■□□□□ 0.77
VPS4AQ9UN37 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4AQ9UN37 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4AQ9UN37 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.84■□□□□ 0.77
VPS4AQ9UN37 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 AC083906.2-201ENST00000511578 360 ntBASIC19.83■□□□□ 0.77
VPS4AQ9UN37 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS4AQ9UN37 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.76
VPS4AQ9UN37 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS4AQ9UN37 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4AQ9UN37 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4AQ9UN37 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms