Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC133681.1-201ENST00000465482 601 ntBASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 MIR4785-201ENST00000585005 73 ntBASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 AL355472.2-201ENST00000422958 438 ntBASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC39.42■■■■□ 3.9
SHROOM4Q9ULL8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC39.41■■■■□ 3.9
SHROOM4Q9ULL8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC39.4■■■■□ 3.9
SHROOM4Q9ULL8 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 AL589743.5-201ENST00000616611 1050 ntBASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
SHROOM4Q9ULL8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC39.38■■■■□ 3.9
SHROOM4Q9ULL8 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC39.38■■■■□ 3.9
SHROOM4Q9ULL8 CD177P1-201ENST00000606252 935 ntBASIC39.38■■■■□ 3.9
SHROOM4Q9ULL8 AC133561.5-201ENST00000635547 218 ntBASIC39.38■■■■□ 3.9
SHROOM4Q9ULL8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC39.38■■■■□ 3.89
SHROOM4Q9ULL8 AC233723.2-201ENST00000623798 2106 ntBASIC39.38■■■■□ 3.89
SHROOM4Q9ULL8 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC39.38■■■■□ 3.89
SHROOM4Q9ULL8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC39.38■■■■□ 3.89
SHROOM4Q9ULL8 GUSBP5-202ENST00000510805 1989 ntBASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 OR2A1-AS1-207ENST00000486094 819 ntBASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
SHROOM4Q9ULL8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC39.36■■■■□ 3.89
SHROOM4Q9ULL8 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC39.35■■■■□ 3.89
SHROOM4Q9ULL8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
SHROOM4Q9ULL8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC39.34■■■■□ 3.89
SHROOM4Q9ULL8 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
SHROOM4Q9ULL8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC39.34■■■■□ 3.89
SHROOM4Q9ULL8 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 KRT18P35-201ENST00000510488 1269 ntBASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC39.33■■■■□ 3.89
SHROOM4Q9ULL8 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC39.32■■■■□ 3.89
SHROOM4Q9ULL8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC39.32■■■■□ 3.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms