Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 AP001160.3-201ENST00000601484 763 ntBASIC18.38■□□□□ 0.53
VSX1Q9NZR4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VSX1Q9NZR4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 CCDC92B-201ENST00000575506 885 ntBASIC18.37■□□□□ 0.53
VSX1Q9NZR4 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 AC027702.1-201ENST00000563810 1770 ntBASIC18.37■□□□□ 0.53
VSX1Q9NZR4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VSX1Q9NZR4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 KRT18P14-201ENST00000534205 1250 ntBASIC18.36■□□□□ 0.53
VSX1Q9NZR4 KRT18P20-201ENST00000548986 1279 ntBASIC18.36■□□□□ 0.53
VSX1Q9NZR4 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 RNF165-205ENST00000588679 2904 ntBASIC18.36■□□□□ 0.53
VSX1Q9NZR4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VSX1Q9NZR4 AC092667.1-201ENST00000434301 2586 ntBASIC18.36■□□□□ 0.53
VSX1Q9NZR4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 SLC7A5P2-201ENST00000553010 536 ntBASIC18.35■□□□□ 0.53
VSX1Q9NZR4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.35■□□□□ 0.53
VSX1Q9NZR4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms