Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
EXOSC3Q9NQT5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
EXOSC3Q9NQT5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 AC137761.2-201ENST00000561729 223 ntBASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 AC145350.3-201ENST00000569033 163 ntBASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.83■□□□□ 0.6
EXOSC3Q9NQT5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 AC010536.3-201ENST00000620306 533 ntBASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.82■□□□□ 0.6
EXOSC3Q9NQT5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 AC007225.1-201ENST00000566331 1836 ntBASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 AC027702.1-201ENST00000563810 1770 ntBASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 TERF1P5-201ENST00000477545 1207 ntBASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 AL162430.1-201ENST00000480705 870 ntBASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
EXOSC3Q9NQT5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 AC007322.3-201ENST00000426526 701 ntBASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 CDV3P1-201ENST00000471403 739 ntBASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 AC007322.4-201ENST00000509611 723 ntBASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EXOSC3Q9NQT5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms