Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP42Q9H9J4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP42Q9H9J4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
USP42Q9H9J4 STK25-234ENST00000535007 2459 ntTSL 2 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP42Q9H9J4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP42Q9H9J4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP42Q9H9J4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP42Q9H9J4 AC211429.1-201ENST00000415277 523 ntBASIC26.35■■□□□ 1.81
USP42Q9H9J4 FAM210CP-201ENST00000445714 574 ntBASIC26.35■■□□□ 1.81
USP42Q9H9J4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USP42Q9H9J4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
USP42Q9H9J4 FAM99A-202ENST00000538190 1989 ntBASIC26.35■■□□□ 1.81
USP42Q9H9J4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
USP42Q9H9J4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
USP42Q9H9J4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC26.34■■□□□ 1.81
USP42Q9H9J4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
USP42Q9H9J4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP42Q9H9J4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC26.33■■□□□ 1.81
USP42Q9H9J4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC26.33■■□□□ 1.81
USP42Q9H9J4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC26.33■■□□□ 1.81
USP42Q9H9J4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP42Q9H9J4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP42Q9H9J4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP42Q9H9J4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC26.33■■□□□ 1.81
USP42Q9H9J4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP42Q9H9J4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP42Q9H9J4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.8
USP42Q9H9J4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC26.33■■□□□ 1.8
USP42Q9H9J4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP42Q9H9J4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP42Q9H9J4 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP42Q9H9J4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
USP42Q9H9J4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.32■■□□□ 1.8
USP42Q9H9J4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC26.32■■□□□ 1.8
USP42Q9H9J4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 POM121L13P-201ENST00000422362 380 ntBASIC26.32■■□□□ 1.8
USP42Q9H9J4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC26.32■■□□□ 1.8
USP42Q9H9J4 AC007322.3-201ENST00000426526 701 ntBASIC26.32■■□□□ 1.8
USP42Q9H9J4 CYP21A1P-202ENST00000354927 1481 ntBASIC26.32■■□□□ 1.8
USP42Q9H9J4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
USP42Q9H9J4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC26.32■■□□□ 1.8
USP42Q9H9J4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP42Q9H9J4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP42Q9H9J4 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP42Q9H9J4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP42Q9H9J4 REXO1L12P-201ENST00000622156 912 ntBASIC26.31■■□□□ 1.8
USP42Q9H9J4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.31■■□□□ 1.8
USP42Q9H9J4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USP42Q9H9J4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP42Q9H9J4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP42Q9H9J4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC26.31■■□□□ 1.8
USP42Q9H9J4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC26.31■■□□□ 1.8
USP42Q9H9J4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USP42Q9H9J4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP42Q9H9J4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP42Q9H9J4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP42Q9H9J4 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP42Q9H9J4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC26.3■■□□□ 1.8
USP42Q9H9J4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.3■■□□□ 1.8
USP42Q9H9J4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 463.5 ms