Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
AMBRA1Q9C0C7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
AMBRA1Q9C0C7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 AL162377.1-201ENST00000618844 1793 ntBASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 AC005224.4-201ENST00000583262 1652 ntBASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 AC007225.1-201ENST00000566331 1836 ntBASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 TSPY26P-201ENST00000476365 1326 ntBASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
AMBRA1Q9C0C7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
AMBRA1Q9C0C7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 IRS3P-201ENST00000223076 1006 ntBASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 AC105233.4-201ENST00000642045 216 ntBASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 AL512408.1-201ENST00000569378 2000 ntBASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
AMBRA1Q9C0C7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AMBRA1Q9C0C7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms