Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 KRT18P6-201ENST00000555540 1265 ntBASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 AL162412.1-201ENST00000567129 965 ntBASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CLIP3Q96DZ5 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.8■□□□□ 0.76
CLIP3Q96DZ5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 BX276092.2-201ENST00000417668 665 ntBASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 AC098934.4-201ENST00000564127 592 ntBASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP3Q96DZ5 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 FBXW4P1-201ENST00000426721 2239 ntBASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 AC073210.2-201ENST00000430369 194 ntBASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 RARRES2P4-201ENST00000514074 484 ntBASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.78■□□□□ 0.76
CLIP3Q96DZ5 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms