Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.34■■□□□ 1.33
ERCC4Q92889 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ERCC4Q92889 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ERCC4Q92889 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
ERCC4Q92889 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ERCC4Q92889 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.33■■□□□ 1.33
ERCC4Q92889 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC23.33■■□□□ 1.33
ERCC4Q92889 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.33■■□□□ 1.33
ERCC4Q92889 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
ERCC4Q92889 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
ERCC4Q92889 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
ERCC4Q92889 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC23.33■■□□□ 1.33
ERCC4Q92889 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
ERCC4Q92889 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.33■■□□□ 1.33
ERCC4Q92889 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.33■■□□□ 1.33
ERCC4Q92889 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.33■■□□□ 1.33
ERCC4Q92889 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.33■■□□□ 1.33
ERCC4Q92889 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.33■■□□□ 1.33
ERCC4Q92889 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
ERCC4Q92889 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
ERCC4Q92889 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.33■■□□□ 1.32
ERCC4Q92889 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.33■■□□□ 1.32
ERCC4Q92889 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
ERCC4Q92889 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
ERCC4Q92889 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
ERCC4Q92889 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
ERCC4Q92889 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.32■■□□□ 1.32
ERCC4Q92889 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.32■■□□□ 1.32
ERCC4Q92889 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
ERCC4Q92889 AC091305.1-201ENST00000479476 895 ntBASIC23.32■■□□□ 1.32
ERCC4Q92889 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.32■■□□□ 1.32
ERCC4Q92889 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.32■■□□□ 1.32
ERCC4Q92889 MIR6084-201ENST00000622012 110 ntBASIC23.32■■□□□ 1.32
ERCC4Q92889 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
ERCC4Q92889 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.32■■□□□ 1.32
ERCC4Q92889 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
ERCC4Q92889 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.32■■□□□ 1.32
ERCC4Q92889 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.32■■□□□ 1.32
ERCC4Q92889 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
ERCC4Q92889 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ERCC4Q92889 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
ERCC4Q92889 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
ERCC4Q92889 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ERCC4Q92889 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.31■■□□□ 1.32
ERCC4Q92889 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ERCC4Q92889 SUDS3P1-201ENST00000505831 966 ntBASIC23.31■■□□□ 1.32
ERCC4Q92889 AC012414.1-201ENST00000556676 535 ntBASIC23.31■■□□□ 1.32
ERCC4Q92889 EEF1DP3-203ENST00000566025 782 ntBASIC23.31■■□□□ 1.32
ERCC4Q92889 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC23.31■■□□□ 1.32
ERCC4Q92889 AL512408.1-201ENST00000569378 2000 ntBASIC23.31■■□□□ 1.32
ERCC4Q92889 AC020907.5-201ENST00000624372 1936 ntBASIC23.31■■□□□ 1.32
ERCC4Q92889 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
ERCC4Q92889 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.31■■□□□ 1.32
ERCC4Q92889 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ERCC4Q92889 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.31■■□□□ 1.32
ERCC4Q92889 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
ERCC4Q92889 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
ERCC4Q92889 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
ERCC4Q92889 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
ERCC4Q92889 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
ERCC4Q92889 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.3■■□□□ 1.32
ERCC4Q92889 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
ERCC4Q92889 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
ERCC4Q92889 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.3■■□□□ 1.32
ERCC4Q92889 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
ERCC4Q92889 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.3■■□□□ 1.32
ERCC4Q92889 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.3■■□□□ 1.32
ERCC4Q92889 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.3■■□□□ 1.32
ERCC4Q92889 TPRG1LP1-201ENST00000598702 760 ntBASIC23.3■■□□□ 1.32
ERCC4Q92889 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
ERCC4Q92889 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
ERCC4Q92889 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
ERCC4Q92889 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.29■■□□□ 1.32
ERCC4Q92889 AL121603.2-201ENST00000557373 2117 ntBASIC23.29■■□□□ 1.32
ERCC4Q92889 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
ERCC4Q92889 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.29■■□□□ 1.32
ERCC4Q92889 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.29■■□□□ 1.32
ERCC4Q92889 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.29■■□□□ 1.32
ERCC4Q92889 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.29■■□□□ 1.32
ERCC4Q92889 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
ERCC4Q92889 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
ERCC4Q92889 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
ERCC4Q92889 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
ERCC4Q92889 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
ERCC4Q92889 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
ERCC4Q92889 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.28■■□□□ 1.32
ERCC4Q92889 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
ERCC4Q92889 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
ERCC4Q92889 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.28■■□□□ 1.32
ERCC4Q92889 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.28■■□□□ 1.32
ERCC4Q92889 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.28■■□□□ 1.32
ERCC4Q92889 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.28■■□□□ 1.32
ERCC4Q92889 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms