Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 CYP2T1P-201ENST00000432607 1285 ntBASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 AC068338.2-201ENST00000563278 1430 ntBASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SHROOM3Q8TF72 AC007322.4-201ENST00000509611 723 ntBASIC21.08■□□□□ 0.96
SHROOM3Q8TF72 AL109923.1-201ENST00000618799 583 ntBASIC21.08■□□□□ 0.96
SHROOM3Q8TF72 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM3Q8TF72 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 AC073314.1-201ENST00000568729 2216 ntBASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM3Q8TF72 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 SLC7A5P1-201ENST00000568957 537 ntBASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 AC080038.1-201ENST00000611274 1154 ntBASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 AL356652.1-201ENST00000615962 565 ntBASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 AC087633.2-202ENST00000565166 1439 ntBASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM3Q8TF72 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SHROOM3Q8TF72 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM3Q8TF72 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 AP005212.1-201ENST00000581547 1997 ntBASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 TSPY20P-201ENST00000450910 630 ntBASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 AC231657.2-201ENST00000624556 255 ntBASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms