Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 AC105020.6-201ENST00000621523 1217 ntBASIC20.15■□□□□ 0.82
LMX1AQ8TE12 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
LMX1AQ8TE12 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
LMX1AQ8TE12 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1AQ8TE12 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 AC008403.3-201ENST00000598924 454 ntBASIC20.13■□□□□ 0.81
LMX1AQ8TE12 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
LMX1AQ8TE12 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 ECEL1P1-201ENST00000373592 1742 ntBASIC20.12■□□□□ 0.81
LMX1AQ8TE12 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1AQ8TE12 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 UNC93B4-201ENST00000505679 747 ntBASIC20.11■□□□□ 0.81
LMX1AQ8TE12 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
LMX1AQ8TE12 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms