Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 GUSBP5-202ENST00000510805 1989 ntBASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 SPIB-206ENST00000596074 847 ntTSL 2 BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USHBP1Q8N6Y0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 Z99916.2-201ENST00000604037 246 ntBASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
USHBP1Q8N6Y0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 AC233723.2-201ENST00000623798 2106 ntBASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC27.33■■□□□ 1.97
USHBP1Q8N6Y0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC27.33■■□□□ 1.96
USHBP1Q8N6Y0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 HES2-205ENST00000487437 968 ntTSL 3 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USHBP1Q8N6Y0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 C2orf69P4-201ENST00000565394 541 ntBASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USHBP1Q8N6Y0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
USHBP1Q8N6Y0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 POM121L13P-201ENST00000422362 380 ntBASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms