Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC116Q8IYX3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC116Q8IYX3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC116Q8IYX3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 AL157384.1-201ENST00000445995 2473 ntBASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 AL162430.1-201ENST00000480705 870 ntBASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 AC137761.2-201ENST00000561729 223 ntBASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 AC145350.3-201ENST00000569033 163 ntBASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 MYCNOS-205ENST00000641950 531 ntBASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 RBM17P2-201ENST00000616397 1405 ntBASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC116Q8IYX3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 MIR935-201ENST00000401179 91 ntBASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC116Q8IYX3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC116Q8IYX3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC116Q8IYX3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC116Q8IYX3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 AC243732.1-201ENST00000612648 864 ntBASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 AC116050.2-201ENST00000612102 1779 ntBASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC116Q8IYX3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC116Q8IYX3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC116Q8IYX3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC116Q8IYX3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC116Q8IYX3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC116Q8IYX3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms