Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 AL138781.2-201ENST00000617896 1843 ntBASIC12.95□□□□□ -0.34
LINC00643Q86TS7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 AC005332.7-201ENST00000614046 2005 ntBASIC12.95□□□□□ -0.34
LINC00643Q86TS7 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 PRORSD1P-202ENST00000563365 2154 ntBASIC12.94□□□□□ -0.34
LINC00643Q86TS7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 AC104564.3-201ENST00000582367 638 ntBASIC12.94□□□□□ -0.34
LINC00643Q86TS7 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 AL162377.1-201ENST00000618844 1793 ntBASIC12.94□□□□□ -0.34
LINC00643Q86TS7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00643Q86TS7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 AC108673.1-201ENST00000510422 1159 ntBASIC12.93□□□□□ -0.34
LINC00643Q86TS7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00643Q86TS7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 AL359258.2-201ENST00000564063 1566 ntBASIC12.92□□□□□ -0.34
LINC00643Q86TS7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 AC099778.1-201ENST00000568593 1911 ntBASIC12.92□□□□□ -0.34
LINC00643Q86TS7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00643Q86TS7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms