Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 SERF2-207ENST00000409614 582 ntTSL 2 BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 AC105020.6-201ENST00000621523 1217 ntBASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 AC239809.2-201ENST00000415381 517 ntBASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 HES2-205ENST00000487437 968 ntTSL 3 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 AC092053.2-201ENST00000640557 1818 ntBASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC88AQ3V6T2 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.45■■□□□ 1.67
CCDC88AQ3V6T2 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
CCDC88AQ3V6T2 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.67
CCDC88AQ3V6T2 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC25.45■■□□□ 1.67
CCDC88AQ3V6T2 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.45■■□□□ 1.67
CCDC88AQ3V6T2 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
CCDC88AQ3V6T2 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.44■■□□□ 1.66
CCDC88AQ3V6T2 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 AC010542.4-201ENST00000563151 1910 ntBASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 AC242852.2-201ENST00000615738 1807 ntBASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC88AQ3V6T2 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 AL023875.1-201ENST00000640777 796 ntBASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.42■■□□□ 1.66
CCDC88AQ3V6T2 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 KRASP1-201ENST00000407852 552 ntBASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC88AQ3V6T2 AC245052.3-201ENST00000450182 901 ntBASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 CRK-204ENST00000574295 1391 ntTSL 5 BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms