Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.45■□□□□ 0.54
H3F3AP84243 AC007322.1-201ENST00000426983 750 ntBASIC18.45■□□□□ 0.54
H3F3AP84243 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.45■□□□□ 0.54
H3F3AP84243 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
H3F3AP84243 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.45■□□□□ 0.54
H3F3AP84243 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
H3F3AP84243 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.45■□□□□ 0.54
H3F3AP84243 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.45■□□□□ 0.54
H3F3AP84243 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
H3F3AP84243 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.44■□□□□ 0.54
H3F3AP84243 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.44■□□□□ 0.54
H3F3AP84243 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
H3F3AP84243 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
H3F3AP84243 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
H3F3AP84243 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 AC007322.3-201ENST00000426526 701 ntBASIC18.44■□□□□ 0.54
H3F3AP84243 CDV3P1-201ENST00000471403 739 ntBASIC18.44■□□□□ 0.54
H3F3AP84243 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.44■□□□□ 0.54
H3F3AP84243 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.44■□□□□ 0.54
H3F3AP84243 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.44■□□□□ 0.54
H3F3AP84243 FAM21FP-204ENST00000608637 956 ntBASIC18.44■□□□□ 0.54
H3F3AP84243 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.44■□□□□ 0.54
H3F3AP84243 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
H3F3AP84243 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
H3F3AP84243 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
H3F3AP84243 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
H3F3AP84243 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.43■□□□□ 0.54
H3F3AP84243 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.43■□□□□ 0.54
H3F3AP84243 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.43■□□□□ 0.54
H3F3AP84243 AC026185.1-201ENST00000445748 174 ntBASIC18.43■□□□□ 0.54
H3F3AP84243 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.43■□□□□ 0.54
H3F3AP84243 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.43■□□□□ 0.54
H3F3AP84243 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
H3F3AP84243 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
H3F3AP84243 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.42■□□□□ 0.54
H3F3AP84243 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.42■□□□□ 0.54
H3F3AP84243 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.42■□□□□ 0.54
H3F3AP84243 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.42■□□□□ 0.54
H3F3AP84243 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.42■□□□□ 0.54
H3F3AP84243 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.42■□□□□ 0.54
H3F3AP84243 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.42■□□□□ 0.54
H3F3AP84243 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.42■□□□□ 0.54
H3F3AP84243 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
H3F3AP84243 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.42■□□□□ 0.54
H3F3AP84243 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
H3F3AP84243 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.41■□□□□ 0.54
H3F3AP84243 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 AC006128.1-201ENST00000624704 1661 ntBASIC18.41■□□□□ 0.54
H3F3AP84243 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.41■□□□□ 0.54
H3F3AP84243 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.41■□□□□ 0.54
H3F3AP84243 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.41■□□□□ 0.54
H3F3AP84243 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
H3F3AP84243 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.41■□□□□ 0.54
H3F3AP84243 AC016405.3-201ENST00000607710 860 ntBASIC18.41■□□□□ 0.54
H3F3AP84243 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.41■□□□□ 0.54
H3F3AP84243 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
H3F3AP84243 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
H3F3AP84243 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
H3F3AP84243 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms