Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL031133.1-201ENST00000406807 723 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKDCP78527 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.15■□□□□ 0.02
PRKDCP78527 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKDCP78527 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PRKDCP78527 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PRKDCP78527 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PRKDCP78527 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKDCP78527 AC110285.5-201ENST00000611501 352 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKDCP78527 ABCB10P4-201ENST00000566803 2184 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 UNC93B2-201ENST00000285383 730 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 AL355355.2-201ENST00000442321 338 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 NXN-202ENST00000537628 1340 ntTSL 3 BASIC15.15■□□□□ 0.02
PRKDCP78527 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PRKDCP78527 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.14■□□□□ 0.01
PRKDCP78527 FITM1-202ENST00000559294 800 ntBASIC15.14■□□□□ 0.01
PRKDCP78527 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKDCP78527 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKDCP78527 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.14■□□□□ 0.01
PRKDCP78527 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKDCP78527 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKDCP78527 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKDCP78527 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKDCP78527 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKDCP78527 KRT18P16-201ENST00000510337 1294 ntBASIC15.14■□□□□ 0.01
PRKDCP78527 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC15.14■□□□□ 0.01
PRKDCP78527 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC15.14■□□□□ 0.01
PRKDCP78527 AL139125.2-201ENST00000623134 1869 ntBASIC15.14■□□□□ 0.01
PRKDCP78527 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.14■□□□□ 0.01
PRKDCP78527 AC005829.2-201ENST00000571422 1056 ntBASIC15.14■□□□□ 0.01
PRKDCP78527 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKDCP78527 SERP1-205ENST00000487153 657 ntTSL 4 BASIC15.13■□□□□ 0.01
PRKDCP78527 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC15.13■□□□□ 0.01
PRKDCP78527 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKDCP78527 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PRKDCP78527 KRT18P68-201ENST00000392293 1000 ntBASIC15.13■□□□□ 0.01
PRKDCP78527 PVRIG2P-201ENST00000435460 978 ntBASIC15.13■□□□□ 0.01
PRKDCP78527 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.13■□□□□ 0.01
PRKDCP78527 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKDCP78527 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKDCP78527 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC15.13■□□□□ 0.01
PRKDCP78527 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKDCP78527 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.13■□□□□ 0.01
PRKDCP78527 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
PRKDCP78527 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PRKDCP78527 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKDCP78527 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PRKDCP78527 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKDCP78527 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.12■□□□□ 0.01
PRKDCP78527 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKDCP78527 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PRKDCP78527 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKDCP78527 AP003733.4-201ENST00000623785 1697 ntBASIC15.12■□□□□ 0.01
PRKDCP78527 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PRKDCP78527 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKDCP78527 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.12■□□□□ 0.01
PRKDCP78527 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.12■□□□□ 0.01
PRKDCP78527 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
PRKDCP78527 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKDCP78527 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKDCP78527 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PRKDCP78527 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKDCP78527 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.11■□□□□ 0.01
PRKDCP78527 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.11■□□□□ 0.01
PRKDCP78527 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKDCP78527 AC091799.1-201ENST00000422823 811 ntBASIC15.11■□□□□ 0.01
PRKDCP78527 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.11■□□□□ 0.01
PRKDCP78527 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKDCP78527 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.11■□□□□ 0.01
PRKDCP78527 HTR7P1-201ENST00000538670 1336 ntBASIC15.11■□□□□ 0.01
PRKDCP78527 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKDCP78527 AL353807.1-201ENST00000427475 662 ntBASIC15.11■□□□□ 0.01
PRKDCP78527 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.11■□□□□ 0.01
PRKDCP78527 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKDCP78527 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC15.11■□□□□ 0.01
PRKDCP78527 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKDCP78527 AC022616.7-201ENST00000525383 220 ntBASIC15.11■□□□□ 0.01
PRKDCP78527 AP000550.4-202ENST00000639755 178 ntBASIC15.11■□□□□ 0.01
PRKDCP78527 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.1■□□□□ 0.01
PRKDCP78527 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PRKDCP78527 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.1■□□□□ 0.01
PRKDCP78527 MIR1238-201ENST00000408483 83 ntBASIC15.1■□□□□ 0.01
PRKDCP78527 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.1■□□□□ 0.01
PRKDCP78527 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC15.1■□□□□ 0.01
PRKDCP78527 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PRKDCP78527 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC15.1■□□□□ 0.01
PRKDCP78527 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms