Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
IRX4P78413 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.35■■□□□ 1.01
IRX4P78413 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
IRX4P78413 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
IRX4P78413 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
IRX4P78413 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
IRX4P78413 FEM1AP4-201ENST00000443167 1987 ntBASIC21.34■■□□□ 1.01
IRX4P78413 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.34■■□□□ 1.01
IRX4P78413 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
IRX4P78413 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
IRX4P78413 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
IRX4P78413 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.34■■□□□ 1.01
IRX4P78413 POU5F1P3-201ENST00000428824 1078 ntBASIC21.34■■□□□ 1.01
IRX4P78413 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
IRX4P78413 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
IRX4P78413 AC133552.2-202ENST00000575694 574 ntBASIC21.34■■□□□ 1.01
IRX4P78413 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
IRX4P78413 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
IRX4P78413 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
IRX4P78413 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
IRX4P78413 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.33■■□□□ 1.01
IRX4P78413 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.33■■□□□ 1.01
IRX4P78413 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
IRX4P78413 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.33■■□□□ 1
IRX4P78413 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
IRX4P78413 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.33■■□□□ 1
IRX4P78413 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
IRX4P78413 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
IRX4P78413 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.32■■□□□ 1
IRX4P78413 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.32■■□□□ 1
IRX4P78413 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.32■■□□□ 1
IRX4P78413 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.32■■□□□ 1
IRX4P78413 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
IRX4P78413 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
IRX4P78413 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.32■■□□□ 1
IRX4P78413 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
IRX4P78413 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.32■■□□□ 1
IRX4P78413 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.31■■□□□ 1
IRX4P78413 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.31■■□□□ 1
IRX4P78413 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.31■■□□□ 1
IRX4P78413 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 ITM2C-210ENST00000620962 501 ntBASIC21.31■■□□□ 1
IRX4P78413 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.31■■□□□ 1
IRX4P78413 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
IRX4P78413 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
IRX4P78413 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.3■■□□□ 1
IRX4P78413 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
IRX4P78413 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.3■■□□□ 1
IRX4P78413 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.3■■□□□ 1
IRX4P78413 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.3■■□□□ 1
IRX4P78413 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
IRX4P78413 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.3■■□□□ 1
IRX4P78413 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.3■■□□□ 1
IRX4P78413 KRT18P29-201ENST00000397031 1267 ntBASIC21.3■■□□□ 1
IRX4P78413 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.3■■□□□ 1
IRX4P78413 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
IRX4P78413 AC079089.2-201ENST00000531211 1277 ntBASIC21.3■■□□□ 1
IRX4P78413 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.3■■□□□ 1
IRX4P78413 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.3■■□□□ 1
IRX4P78413 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.3■■□□□ 1
IRX4P78413 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.3■■□□□ 1
IRX4P78413 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
IRX4P78413 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms