Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CKS1BP61024 VGF-203ENST00000611537 1622 ntTSL 5 BASIC14.35□□□□□ -0.11
CKS1BP61024 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CKS1BP61024 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CKS1BP61024 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CKS1BP61024 AC104564.3-201ENST00000582367 638 ntBASIC14.35□□□□□ -0.11
CKS1BP61024 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CKS1BP61024 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 Z98882.1-201ENST00000622160 2253 ntBASIC14.35□□□□□ -0.11
CKS1BP61024 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.35□□□□□ -0.11
CKS1BP61024 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CKS1BP61024 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 C17orf82-201ENST00000623772 1530 ntBASIC14.35□□□□□ -0.11
CKS1BP61024 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.35□□□□□ -0.11
CKS1BP61024 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
CKS1BP61024 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC14.34□□□□□ -0.11
CKS1BP61024 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CKS1BP61024 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
CKS1BP61024 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 AC010997.5-201ENST00000609182 354 ntBASIC14.34□□□□□ -0.11
CKS1BP61024 EXOG-217ENST00000630638 197 ntTSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC14.34□□□□□ -0.11
CKS1BP61024 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 ME2-206ENST00000638410 2289 ntTSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 ME2-210ENST00000639255 2262 ntTSL 5 BASIC14.34□□□□□ -0.11
CKS1BP61024 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CKS1BP61024 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CKS1BP61024 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CKS1BP61024 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CKS1BP61024 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.33□□□□□ -0.12
CKS1BP61024 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CKS1BP61024 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC14.33□□□□□ -0.12
CKS1BP61024 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 PRTG-204ENST00000561292 833 ntTSL 3 BASIC14.33□□□□□ -0.12
CKS1BP61024 Z92544.1-202ENST00000571933 1220 ntBASIC14.33□□□□□ -0.12
CKS1BP61024 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC14.33□□□□□ -0.12
CKS1BP61024 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CKS1BP61024 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC14.33□□□□□ -0.12
CKS1BP61024 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CKS1BP61024 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
CKS1BP61024 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC14.32□□□□□ -0.12
CKS1BP61024 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CKS1BP61024 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CKS1BP61024 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms