Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.45■□□□□ 0.86
LIMK1P53667 AL135905.2-201ENST00000584934 1404 ntBASIC20.45■□□□□ 0.86
LIMK1P53667 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMK1P53667 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.45■□□□□ 0.86
LIMK1P53667 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.45■□□□□ 0.86
LIMK1P53667 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMK1P53667 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMK1P53667 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
LIMK1P53667 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMK1P53667 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.45■□□□□ 0.86
LIMK1P53667 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.45■□□□□ 0.86
LIMK1P53667 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMK1P53667 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMK1P53667 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMK1P53667 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LIMK1P53667 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMK1P53667 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMK1P53667 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMK1P53667 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMK1P53667 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMK1P53667 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMK1P53667 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMK1P53667 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMK1P53667 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMK1P53667 CD177P1-201ENST00000606252 935 ntBASIC20.44■□□□□ 0.86
LIMK1P53667 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMK1P53667 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMK1P53667 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
LIMK1P53667 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.43■□□□□ 0.86
LIMK1P53667 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 KRT18P35-201ENST00000510488 1269 ntBASIC20.43■□□□□ 0.86
LIMK1P53667 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
LIMK1P53667 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
LIMK1P53667 LINC01960-201ENST00000563759 1884 ntBASIC20.43■□□□□ 0.86
LIMK1P53667 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMK1P53667 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMK1P53667 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMK1P53667 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LIMK1P53667 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 MCRIP2P1-201ENST00000394346 511 ntBASIC20.42■□□□□ 0.86
LIMK1P53667 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMK1P53667 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIMK1P53667 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.42■□□□□ 0.86
LIMK1P53667 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.42■□□□□ 0.86
LIMK1P53667 AC133681.1-201ENST00000465482 601 ntBASIC20.42■□□□□ 0.86
LIMK1P53667 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMK1P53667 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIMK1P53667 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMK1P53667 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LIMK1P53667 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LIMK1P53667 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMK1P53667 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LIMK1P53667 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 TMPOP1-202ENST00000424642 1267 ntBASIC20.41■□□□□ 0.86
LIMK1P53667 CDV3P1-201ENST00000471403 739 ntBASIC20.41■□□□□ 0.86
LIMK1P53667 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.41■□□□□ 0.86
LIMK1P53667 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMK1P53667 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMK1P53667 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMK1P53667 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms