Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LIG3P49916 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
LIG3P49916 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.53■■□□□ 1.04
LIG3P49916 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIG3P49916 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LIG3P49916 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIG3P49916 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIG3P49916 AC005224.4-201ENST00000583262 1652 ntBASIC21.53■■□□□ 1.04
LIG3P49916 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIG3P49916 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIG3P49916 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIG3P49916 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
LIG3P49916 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIG3P49916 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.52■■□□□ 1.04
LIG3P49916 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
LIG3P49916 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.52■■□□□ 1.04
LIG3P49916 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LIG3P49916 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.52■■□□□ 1.04
LIG3P49916 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.52■■□□□ 1.04
LIG3P49916 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIG3P49916 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIG3P49916 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIG3P49916 FEM1AP1-201ENST00000431297 1995 ntBASIC21.52■■□□□ 1.04
LIG3P49916 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.52■■□□□ 1.03
LIG3P49916 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
LIG3P49916 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
LIG3P49916 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
LIG3P49916 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.51■■□□□ 1.03
LIG3P49916 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.51■■□□□ 1.03
LIG3P49916 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.51■■□□□ 1.03
LIG3P49916 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.51■■□□□ 1.03
LIG3P49916 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 PCDHAC2-203ENST00000615316 3011 ntBASIC21.51■■□□□ 1.03
LIG3P49916 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.51■■□□□ 1.03
LIG3P49916 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.51■■□□□ 1.03
LIG3P49916 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.51■■□□□ 1.03
LIG3P49916 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIG3P49916 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
LIG3P49916 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.5■■□□□ 1.03
LIG3P49916 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.5■■□□□ 1.03
LIG3P49916 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIG3P49916 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.49■■□□□ 1.03
LIG3P49916 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
LIG3P49916 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.49■■□□□ 1.03
LIG3P49916 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.49■■□□□ 1.03
LIG3P49916 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.49■■□□□ 1.03
LIG3P49916 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.49■■□□□ 1.03
LIG3P49916 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.49■■□□□ 1.03
LIG3P49916 AC022517.1-201ENST00000592429 346 ntBASIC21.49■■□□□ 1.03
LIG3P49916 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.49■■□□□ 1.03
LIG3P49916 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
LIG3P49916 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.49■■□□□ 1.03
LIG3P49916 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LIG3P49916 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
LIG3P49916 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.48■■□□□ 1.03
LIG3P49916 AC079140.4-201ENST00000507448 529 ntBASIC21.48■■□□□ 1.03
LIG3P49916 KRT18P61-201ENST00000585825 1298 ntBASIC21.48■■□□□ 1.03
LIG3P49916 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.48■■□□□ 1.03
LIG3P49916 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIG3P49916 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.48■■□□□ 1.03
LIG3P49916 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.48■■□□□ 1.03
LIG3P49916 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
LIG3P49916 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
LIG3P49916 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LIG3P49916 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIG3P49916 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
LIG3P49916 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.47■■□□□ 1.03
LIG3P49916 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.47■■□□□ 1.03
LIG3P49916 AL034346.1-201ENST00000568244 1277 ntBASIC21.47■■□□□ 1.03
LIG3P49916 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms