Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 POM121L13P-201ENST00000422362 380 ntBASIC20.85■□□□□ 0.93
TNFRSF4P43489 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.85■□□□□ 0.93
TNFRSF4P43489 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TNFRSF4P43489 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TNFRSF4P43489 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 AC069544.1-201ENST00000609399 999 ntBASIC20.84■□□□□ 0.93
TNFRSF4P43489 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.84■□□□□ 0.93
TNFRSF4P43489 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFRSF4P43489 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
TNFRSF4P43489 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TNFRSF4P43489 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.83■□□□□ 0.93
TNFRSF4P43489 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
TNFRSF4P43489 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
TNFRSF4P43489 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.83■□□□□ 0.93
TNFRSF4P43489 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TNFRSF4P43489 MIR718-201ENST00000390190 70 ntBASIC20.83■□□□□ 0.93
TNFRSF4P43489 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TNFRSF4P43489 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TNFRSF4P43489 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TNFRSF4P43489 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.83■□□□□ 0.92
TNFRSF4P43489 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
TNFRSF4P43489 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TNFRSF4P43489 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TNFRSF4P43489 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TNFRSF4P43489 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.82■□□□□ 0.92
TNFRSF4P43489 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
TNFRSF4P43489 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.82■□□□□ 0.92
TNFRSF4P43489 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.82■□□□□ 0.92
TNFRSF4P43489 AC233263.1-201ENST00000578059 224 ntBASIC20.82■□□□□ 0.92
TNFRSF4P43489 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
TNFRSF4P43489 AC233723.2-201ENST00000623798 2106 ntBASIC20.82■□□□□ 0.92
TNFRSF4P43489 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TNFRSF4P43489 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.82■□□□□ 0.92
TNFRSF4P43489 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms